Stuppy Aquaponics Blog

Stuppy Aquaponics Curriculum Part 6: Nitrogen cycle and colonization of bacteria

Posted by Scott Moore on Dec 14, 2017, 2:30:00 PM

Welcome to our ongoing series highlighting our Aquaponics Curriculum!

Over the coming weeks, we will be posting a series of articles covering the basics of each Curriculum Topic. Today, we are covering Topic 2, Lesson 2, The Nitrogen Cycle and Colonization of Bacteria. Each of these blog posts is aimed to give an overview of the subject and provide one or more critical thinking questions. You can find our first post in this series here. Enjoy!

The nitrogen cycle depicts the process in which nitrogen is converted between several chemical forms by way of nitrogen fixation, ammonification, nitrification and denitrifcation. In aquaponics, nitrification is the key conversion process of nitrogen. Nitrification is the process of oxidation of ammonia or ammonium (NH3 or NH4+) to nitrite (NO2-) and nitrite to nitrate (NO3-) by nitrifying bacteria (see Equations 1 and 2).

The nitrogen conversion is shown in a diagram in Figure 1. Fish are fed pellets and the fish excrete ammonia. Decaying matter in the aquaponics system can also produce ammonia. Nitrosomonas sp. converts the ammonia to nitrite and Nitrobacter sp. converts the nitrite to nitrate. The plants can then use the nitrate in the growing process.

bacteria_cycle.png
Figure 1: The flow of nitrogen in an aquaponics system.

𝑁𝑖𝑡𝑟𝑜𝑠𝑜𝑚𝑜𝑛𝑎𝑠 𝑠𝑝.: 𝑁𝐻3+𝑂2→𝑁𝑂2−+3𝐻++2𝑒−
𝑁𝑖𝑡𝑟𝑜𝑏𝑎𝑐𝑡𝑒𝑟 𝑠𝑝.: 𝑁𝐻2−+𝐻2𝑂→𝑁𝑂3−+2𝐻++2𝑒−
Equations 1 and 2: Two-step chemical equations of nitrifying bacteria converting ammonia to nitrite and nitrite to nitrate.


Bacterial colonization is when the bacteria establish a group or ‘colony’ essentially building its numbers to fight off infections or invasions from other bacteria or microorganisms that can decrease its population. Furthermore, ultraviolet rays from the sun can damage the bacteria as well. Nitrosomonas sp. and Nitrobacter sp. can colonize on the surfaces of the system such as tank walls, rocks or substrates. These colonies of bacteria need a specific environment to thrive in which will be discussed in future lessons. 


In a new aquaponics system, the colonization of bacteria can take 3-5 days. If these bacterial colonies do not establish well in the aquaponics system, the ammonia levels will increase to toxic levels for the fish. Additionally, the plants will not have a reliable source for nitrogen and will have problems surviving.

Topics: Aquaponics, Aquaponics Curriculum